a
    vmi%                     @   s>   d dl Z d dlZd dlZdd Zdd ZdddZd	d
 ZdS )    Nc           
      C   s   d}t | t | }}t ||  }t || }t |d d t |t | t |d d   }	d| t t |	 S )z8Compute haversine distance in meters between two points.i6a    )npradianssincosZarcsinsqrt)
Zlat1Zlon1Zlat2Zlon2RZphi1Zphi2ZdphiZdlama r
   X/home/japhy/trackingScienceReplication.artiswrong.com/app/blueprints/datasets/parsers.py	haversine   s    8r   c                 C   s  |  ddg } | dd d| d< | dd d| d< | dd d| d< | d  }t| j|df | j|df | j|df | j|df | j|d	f< | d | d  j }| j||d
k@ d	f |||d
k@   | j||d
k@ df< | d | d  | d< | d | d  | d< | dd d| d< | dd d| d< | d  }|	 rt
| j|df | j|df }t
| j|df | j|df }|| }|tj dtj  tj }|| j|df< | jg ddd | S )zCompute speed, step_length, turning_angle per animal.

    Expects df with columns: animal_id, timestamp, lat, lon, sorted by animal_id and timestamp.
    	animal_id	timestamplat   prev_latlonprev_lon	prev_timestep_lengthr   speeddxdyprev_dxprev_dyr   turning_angle)r   r   r   r   r   r   r   Tcolumnsinplace)Zsort_valuescopygroupbyshiftnotnar   locdttotal_secondsanyr   Zarctan2mathpidrop)dfmaskr$   Z	has_prev2Zangle1Zangle2tar
   r
   r   compute_derived_fields   s4    8
  
r-      c                 C   s>   t j| |d}t|jdd |j D |djdddS )z9Read first N rows of a CSV to detect columns for mapping.)nrowsc                 S   s   i | ]\}}|t |qS r
   )str).0colr$   r
   r
   r   
<dictcomp>@       z%parse_csv_preview.<locals>.<dictcomp>   records)Zorient)r   dtypessample)pdread_csvlistr   r7   itemsheadto_dict)	file_pathr/   r*   r
   r
   r   parse_csv_preview;   s
    r@   c                    s   t | }|d d|d d|d d|d di}|j|dd t j|d dd|d< t j|d dd	|d< t j|d dd	|d< |d t|d< |jg d
dd h d  fdd|jD }|r|| j	dd dd|d< |j
|dd nd|d< t|}|S )zParse full CSV using the column mapping and return a DataFrame
    ready for insertion into data_points.

    column_mapping: dict with keys 'timestamp', 'lat', 'lon', 'animal_id'
                    mapped to the actual CSV column names.
    r   r   r   r   Tr   )Zinfer_datetime_formatcoerce)errors)r   r   r   r   )subsetr   >   r   r   r   r   c                    s   g | ]}| vr|qS r
   r
   )r1   cZ	core_colsr
   r   
<listcomp>d   r4   zingest_csv.<locals>.<listcomp>c                 S   s   dd |   D S )Nc                 S   s    i | ]\}}t |r||qS r
   )r9   r"   )r1   kvr
   r
   r   r3   g   r4   z0ingest_csv.<locals>.<lambda>.<locals>.<dictcomp>)r<   )rowr
   r
   r   <lambda>g   r4   zingest_csv.<locals>.<lambda>r   )Zaxissensor_dataN)r9   r:   renameZto_datetimeZ
to_numericZastyper0   Zdropnar   applyr)   r-   )r?   column_mappingr*   rL   
extra_colsr
   rE   r   
ingest_csvE   s,    

rP   )r.   )	r'   Znumpyr   Zpandasr9   r   r-   r@   rP   r
   r
   r
   r   <module>   s   
+

